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ASM197150v1

Organism name:
Xylella fastidiosa subsp. multiplex (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CFBP8417
BioSample:
SAMN04546482
BioProject:
PRJNA314984
Submitter:
INRA
Date:
2017/01/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001971505.1 (latest)
RefSeq assembly accession:
GCF_001971505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LUYB01
Assembly method:
Velvet v. 1.2.07; SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
125.0x
Sequencing technology:
Illumina MiSeq

IDs: 962831 [UID] 4013568 [GenBank] 4055028 [RefSeq]

See Genome Information for Xylella fastidiosa

There are 226 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/17/2016 11:20:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,339
CDS (total)::2,283
Genes (coding)::2,080
CDS (coding)::2,080
Genes (RNA)::56
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::203
Pseudo Genes (ambiguous residues)::0 of 203
Pseudo Genes (frameshifted)::23 of 203
Pseudo Genes (incomplete)::175 of 203
Pseudo Genes (internal stop)::13 of 203
Pseudo Genes (multiple problems)::7 of 203
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,504,981
Total ungapped length2,504,981
Number of contigs256
Contig N50118,419
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)256

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,504,9812562,504,981118,41900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xylella fastidiosa subsp. multiplexXylella fastidiosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000428665.1Xylella fastidiosa subsp. multiplex ATCC 35871type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000428665.1Xylella fastidiosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4293.9497.52
Best-match type99.4293.9497.52

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna